K-PAM: Klebsiella species serotype predictor and surface antigens modeler

... An In silico Diagnostic Tool



Schematic representation generator


Here, You can upload your main chain and side chain repeat units seperated by commas in the text boxes given below and generate schematic representation. This generator does not give information on linkages for a polymer. Refer to the keywords in the table below (sugar code) for usage in the generator.


Reference

[1]Glycome Informatics, Kiyoko F. Aoki-Kinoshita, CRC Press, 2009.
[2]EK3D: an E. coli K antigen 3-dimensional structure database.
LINKS:
Link1   Link2

Here is an example for main chain

LRha,a1-3,DGlc,b1-2,LRha,a1-2,LRha,a1-OH,


Here is an example for side chain

(i)3.2,DGlcA,b1-3,LRha,a1-3|,


3.2 - 3 represents the sugar to which it should be attached to in the main chain and 2 represents the number of sugars in the side chain, a1-3| represents the side chain being attached from the top


(ii)2,DGlc,b1-2|,

2.1 - 2 represents the sugar to which it should be attached to in the main chain and 1 represents the number of sugars in the side chain, b1-3|| represents the side chain being attached from the bottom

Example
The representation is:




Schematic generator tool

Type in your sequence here: